a cloud-based proteomic pipeline

ProteoWorker is a turnkey data-dependent proteomics analysis solution that takes raw MS files from instrument to analysis to publication in one cloud-based app. With only a web browser you can search, analyze, and filter data and export tables, charts, and graphs for sharing and publication. There is no software to install, no expensive computing clusters to maintain, and no special hardware required.

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Cost Effective

  • Fast and efficient analysis saves time (time = money!)
  • Multiple pricing tiers to fit your needs (1 user or 100 users)
  • No need for local high end computers
  • No special operating system requirements (Mac, PC and Linux compatible)
  • No hardware maintenance costs

Fast And Easy

  • No software to install on your machine!
  • Computing power is scaled on demand to decrease analysis time
  • Easy data transfer to ProteoWorker from most storage centers (Dropbox, AWS, OneDrive, Google)
  • Displays progress of every processing step, keeping users well-informed
  • Validates files after processing and flags possible problems
  • Easy analysis setup and data sharing through the web


  • Seamless pipeline from input to final report
  • Tools for searching, filtering, analysis and sharing
  • One input file can be used to create multiple working sets
  • Simple, single user interaction to process data
  • Use SEQUEST zip, mzXML, or mzML format for import
  • No more post processing in spreadsheets
  • Easy to email a link for sharing final reports